Working with R
2
Set up a basic Project folder
From questions to data to answers using R
Introduction
Preliminaries
Test finder
Working with R
1
Install packages
2
Set up a basic Project folder
3
A recommended analysis workflow
4
Building plots using the package
ggplot2
5
Titles, labels and annotations
Tests for difference
6
Tests for difference: one factor, two levels
7
ANOVA explained
8
One-way ANOVA
9
Two-way ANOVA with model simplification
Count data
10
Chi-squared analysis of count data
11
Fisher’s Exact Test
Trend data
12
Correlation
13
Simple linear regression
Generalised Linear Models (GLM)
14
GLM introduction
15
GLM poisson with count data
16
GLM with count data
Multivariate Analysis
17
Community Ecology
18
Ordination
19
Principal Components Analysis (PCA)
20
NMDS
Mixed Effects Analyses
21
Mixed effects analysis
Additional help
22
Quantile-quantile plots
23
Power Analysis
24
Error bars
References
References
Working with R
2
Set up a basic Project folder
2
Set up a basic Project folder
1
Install packages
3
A recommended analysis workflow